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1
answer
42
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1
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DESeq2 paired design with missing samples and multiple conditions
deseq2 missing data paired samples multiple treatments written 21 days ago by greg.deakin • 0 • updated 21 days ago by Michael Love ♦ 20k
5
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2
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190
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edgeR paired samples with blocking
limma edger paired samples blocking written 27 days ago by anou • 0 • updated 24 days ago by Gordon Smyth ♦ 35k
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75
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Deseq2 paired analysis
deseq2 paired samples interaction terms written 5 weeks ago by sally.badawi • 0 • updated 5 weeks ago by Michael Love ♦ 20k
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1
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103
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1
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model matrix for edgeR paired-design with batch effect
edger batch effect paired samples written 7 weeks ago by NGS-seeker • 0 • updated 7 weeks ago by Aaron Lun • 21k
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152
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1
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Limma Design Matrix for Paired Samples with Confouding Factors
limma design matrix paired samples confounding factors written 8 weeks ago by yuabrahamliu • 0 • updated 8 weeks ago by Aaron Lun • 21k
2
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1
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143
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1
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Design Matrix with paired and independent samples plus RUVg Spike-in normalization
edger ruvseq design matrix paired samples written 4 months ago by ChrisM • 0 • updated 4 months ago by James W. MacDonald ♦ 48k
3
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2
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240
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2
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EdgeR model formula design matrix
edger design matrix paired samples written 8 months ago by aiko • 0 • updated 8 months ago by Aaron Lun • 21k
3
votes
2
answers
475
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2
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Paired Test - Design Matrix and Contrast Matrix Voom and Limma
limma voom paired samples written 12 months ago by rfbrhm • 0 • updated 12 months ago by Gordon Smyth ♦ 35k
4
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2
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489
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2
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Limma: Best way to analyse treatment response in patients paired pre/post treatment
limma paired samples limma paired analysis written 14 months ago by j.iremonger • 0 • updated 14 months ago by Gordon Smyth ♦ 35k
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631
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1
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Adjusting for covariates in paired sample design DESeq2
deseq deseq2 paired samples covariates multiple time points written 15 months ago by imb • 0
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1
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270
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1
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DEseq2 design with paired individuals at two timepoints, two groups and two responses
deseq2 multiple factor design paired samples multiple time points written 17 months ago by tamsyn.derrick • 0 • updated 17 months ago by Michael Love ♦ 20k
4
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2
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745
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Samples without pair in paired design experiment
deseq2 paired samples written 18 months ago by Vladimir Krasikov • 90 • updated 18 months ago by Gordon Smyth ♦ 35k
3
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2
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480
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2
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limma for Paired Samples vs. lme
limma linear model paired samples written 19 months ago by wewolski • 10 • updated 19 months ago by Aaron Lun • 21k
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545
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Responder Vs Non-Responders Paired Comparison DESEQ2
deseq2 paired samples written 20 months ago by pennakiza • 0 • updated 20 months ago by Michael Love ♦ 20k
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1
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464
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1
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Understanding differences in results with and without setting of pairing factor
deseq2 rna-seq paired samples written 20 months ago by [email protected] • 60 • updated 20 months ago by Michael Love ♦ 20k
2
votes
1
answer
551
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1
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DESeq for paired samples from different time stamps
deseq2 paired samples multiple time points written 21 months ago by lironyoffe • 0
5
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1
answer
688
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1
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limma blocking and including covariates
limma paired samples limma voom written 21 months ago by gstone2 • 0 • updated 21 months ago by Ryan C. Thompson ♦ 7.1k
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1
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532
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1
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DESeq2 estimateDispersionGeneEst taking infinite time
deseq2 paired samples written 22 months ago by gregory.l.stone • 10 • updated 22 months ago by Michael Love ♦ 20k
0
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1
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950
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DESeq2 - how to build design for multiple paired samples before/after with 2 conditions? (non-crossover)
deseq2 biologicalreplicates paired samples multifactorial design written 22 months ago by jahorst • 0
0
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1
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481
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DESeq2 experimental design for paired multifactor test
deseq2 multiple factor design paired samples written 22 months ago by gregory.l.stone • 10 • updated 22 months ago by Michael Love ♦ 20k
2
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1
answer
968
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1
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RNA-seq paired analysis design
limma edger deseq2 design matrix paired samples written 22 months ago by cjmb3 • 0 • updated 22 months ago by Gordon Smyth ♦ 35k
1
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2
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489
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2
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DESeq2: linear combination trouble
deseq deseq2 paired samples written 23 months ago by JamesB • 0
0
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0
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348
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0
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MetagenomeSeq: analysing paired samples
microbiome metagenomeseq paired samples written 2.0 years ago by marypadilha • 0
3
votes
1
answer
426
views
1
answer
Paired RNA-seq experiment with 3 factors using duplicateCorrelation
limma voom multiple factor design paired samples written 2.2 years ago by aec • 40 • updated 2.1 years ago by Gordon Smyth ♦ 35k
2
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2
answers
662
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2
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limma-voom or edgeR for paired designs both within and between comparisons
edger paired samples limma-voom written 2.2 years ago by aec • 40
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